FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1641440_a_at:

>probe:Drosophila_2:1641440_a_at:126:361; Interrogation_Position=3420; Antisense; GCAAGCTCTATGGAGCCACCTTTAT
>probe:Drosophila_2:1641440_a_at:69:307; Interrogation_Position=3438; Antisense; CCTTTATGTGCTCCAACTGTCAGAA
>probe:Drosophila_2:1641440_a_at:96:367; Interrogation_Position=3460; Antisense; GAATCAATGGTACTGCAGTCGTGAA
>probe:Drosophila_2:1641440_a_at:324:499; Interrogation_Position=3477; Antisense; GTCGTGAATGCCAGCTGAGCGATTG
>probe:Drosophila_2:1641440_a_at:380:415; Interrogation_Position=3493; Antisense; GAGCGATTGGGACACACATCACCGA
>probe:Drosophila_2:1641440_a_at:723:149; Interrogation_Position=3508; Antisense; ACATCACCGAACTTGTGGCATTTAA
>probe:Drosophila_2:1641440_a_at:335:403; Interrogation_Position=3536; Antisense; GACTTCACTTAGGACATCAGCATTA
>probe:Drosophila_2:1641440_a_at:221:409; Interrogation_Position=3579; Antisense; GACGTATCGCATATGCACTACTATA
>probe:Drosophila_2:1641440_a_at:620:471; Interrogation_Position=3606; Antisense; TTTACTCAACCGTGTAACTCACTGA
>probe:Drosophila_2:1641440_a_at:275:397; Interrogation_Position=3633; Antisense; GACACAGGACACTGGCGGACCATTT
>probe:Drosophila_2:1641440_a_at:202:573; Interrogation_Position=3646; Antisense; GGCGGACCATTTTCAATTGCGTTTT
>probe:Drosophila_2:1641440_a_at:685:657; Interrogation_Position=3678; Antisense; TAAGTGCTTGCAATTGTACTCAATC
>probe:Drosophila_2:1641440_a_at:425:581; Interrogation_Position=3843; Antisense; TGATAAAATGTTCCTCGTTTTCCCA
>probe:Drosophila_2:1641440_a_at:419:243; Interrogation_Position=3888; Antisense; AATATCCTTGACTTCTTGTTTGCTA

Paste this into a BLAST search page for me
GCAAGCTCTATGGAGCCACCTTTATCCTTTATGTGCTCCAACTGTCAGAAGAATCAATGGTACTGCAGTCGTGAAGTCGTGAATGCCAGCTGAGCGATTGGAGCGATTGGGACACACATCACCGAACATCACCGAACTTGTGGCATTTAAGACTTCACTTAGGACATCAGCATTAGACGTATCGCATATGCACTACTATATTTACTCAACCGTGTAACTCACTGAGACACAGGACACTGGCGGACCATTTGGCGGACCATTTTCAATTGCGTTTTTAAGTGCTTGCAATTGTACTCAATCTGATAAAATGTTCCTCGTTTTCCCAAATATCCTTGACTTCTTGTTTGCTA

Full Affymetrix probeset data:

Annotations for 1641440_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720