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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1641445_s_at:

>probe:Drosophila_2:1641445_s_at:363:1; Interrogation_Position=1294; Antisense; ATCGGCATCTAAGAACCCGTTCTTT
>probe:Drosophila_2:1641445_s_at:20:243; Interrogation_Position=1437; Antisense; AATAGATGCGCGTGTGGCAGCTGCC
>probe:Drosophila_2:1641445_s_at:153:351; Interrogation_Position=1453; Antisense; GCAGCTGCCATGGTTAACCCAGTAG
>probe:Drosophila_2:1641445_s_at:327:543; Interrogation_Position=1487; Antisense; TGGTATTAAGTTCTGAGGACCCCGG
>probe:Drosophila_2:1641445_s_at:448:63; Interrogation_Position=1526; Antisense; ATGTGTGTAATATTCCTGTGCCTTC
>probe:Drosophila_2:1641445_s_at:64:721; Interrogation_Position=1538; Antisense; TTCCTGTGCCTTCGATATGTATCTA
>probe:Drosophila_2:1641445_s_at:418:483; Interrogation_Position=1556; Antisense; GTATCTAATTTGGATGCTCGCCCGA
>probe:Drosophila_2:1641445_s_at:727:419; Interrogation_Position=1579; Antisense; GAGCAATCAAACACCTCAGTTTCGT
>probe:Drosophila_2:1641445_s_at:360:265; Interrogation_Position=1595; Antisense; CAGTTTCGTAGAACCCCTCATTGGA
>probe:Drosophila_2:1641445_s_at:154:367; Interrogation_Position=1628; Antisense; GAATCAGAATCCTACCTATTTACAT
>probe:Drosophila_2:1641445_s_at:90:31; Interrogation_Position=1673; Antisense; ATACATGCATCGATTAACCCCAAAT
>probe:Drosophila_2:1641445_s_at:594:75; Interrogation_Position=1712; Antisense; AGGAGCGAGCGCAATGTTTTGTCAT
>probe:Drosophila_2:1641445_s_at:394:339; Interrogation_Position=1749; Antisense; GCTACATCAGATGGCTCATTCGCAT
>probe:Drosophila_2:1641445_s_at:49:61; Interrogation_Position=1774; Antisense; ATGTATTTCGAAAGGCCGACGCATA

Paste this into a BLAST search page for me
ATCGGCATCTAAGAACCCGTTCTTTAATAGATGCGCGTGTGGCAGCTGCCGCAGCTGCCATGGTTAACCCAGTAGTGGTATTAAGTTCTGAGGACCCCGGATGTGTGTAATATTCCTGTGCCTTCTTCCTGTGCCTTCGATATGTATCTAGTATCTAATTTGGATGCTCGCCCGAGAGCAATCAAACACCTCAGTTTCGTCAGTTTCGTAGAACCCCTCATTGGAGAATCAGAATCCTACCTATTTACATATACATGCATCGATTAACCCCAAATAGGAGCGAGCGCAATGTTTTGTCATGCTACATCAGATGGCTCATTCGCATATGTATTTCGAAAGGCCGACGCATA

Full Affymetrix probeset data:

Annotations for 1641445_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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