FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1641464_s_at:

>probe:Drosophila_2:1641464_s_at:729:245; Interrogation_Position=1714; Antisense; CAACCACAAGTGCAACGGGACCAGC
>probe:Drosophila_2:1641464_s_at:521:139; Interrogation_Position=1728; Antisense; ACGGGACCAGCCAACGCTAGAGGAA
>probe:Drosophila_2:1641464_s_at:117:335; Interrogation_Position=1743; Antisense; GCTAGAGGAAGCGTTGCGGTTAAAC
>probe:Drosophila_2:1641464_s_at:684:329; Interrogation_Position=1758; Antisense; GCGGTTAAACAACGCCGATGGACCA
>probe:Drosophila_2:1641464_s_at:401:355; Interrogation_Position=1839; Antisense; GCACAAACGCTCAGGACGGAGGATT
>probe:Drosophila_2:1641464_s_at:271:549; Interrogation_Position=1856; Antisense; GGAGGATTAAACTACTACAACAACG
>probe:Drosophila_2:1641464_s_at:58:211; Interrogation_Position=1916; Antisense; AAGAATCAGCACGACAACGCTACCA
>probe:Drosophila_2:1641464_s_at:236:315; Interrogation_Position=1954; Antisense; GCCATTGAACAAGAACTTCGCCAAA
>probe:Drosophila_2:1641464_s_at:135:377; Interrogation_Position=1983; Antisense; GAAGACACGCAAACGGGCTGCTTAA
>probe:Drosophila_2:1641464_s_at:175:181; Interrogation_Position=2085; Antisense; AAAACTTTATGCTAGGCTTTATACT
>probe:Drosophila_2:1641464_s_at:196:665; Interrogation_Position=2153; Antisense; TAAATTGTGACTTGTGAGCCAACCA
>probe:Drosophila_2:1641464_s_at:491:415; Interrogation_Position=2168; Antisense; GAGCCAACCACATTAGCACTATCAA
>probe:Drosophila_2:1641464_s_at:72:149; Interrogation_Position=2185; Antisense; ACTATCAAATTTCCATGTCTCTGCC
>probe:Drosophila_2:1641464_s_at:598:307; Interrogation_Position=2197; Antisense; CCATGTCTCTGCCACTGAGTATATA

Paste this into a BLAST search page for me
CAACCACAAGTGCAACGGGACCAGCACGGGACCAGCCAACGCTAGAGGAAGCTAGAGGAAGCGTTGCGGTTAAACGCGGTTAAACAACGCCGATGGACCAGCACAAACGCTCAGGACGGAGGATTGGAGGATTAAACTACTACAACAACGAAGAATCAGCACGACAACGCTACCAGCCATTGAACAAGAACTTCGCCAAAGAAGACACGCAAACGGGCTGCTTAAAAAACTTTATGCTAGGCTTTATACTTAAATTGTGACTTGTGAGCCAACCAGAGCCAACCACATTAGCACTATCAAACTATCAAATTTCCATGTCTCTGCCCCATGTCTCTGCCACTGAGTATATA

Full Affymetrix probeset data:

Annotations for 1641464_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720