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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1641527_at:

>probe:Drosophila_2:1641527_at:445:131; Interrogation_Position=1850; Antisense; ACACGTCGTCCTTTATGAACTTCGG
>probe:Drosophila_2:1641527_at:365:487; Interrogation_Position=1874; Antisense; GTAGCTATTTCTGTGGAGTCCTGGC
>probe:Drosophila_2:1641527_at:699:579; Interrogation_Position=1895; Antisense; TGGCCGCTTTGGTTTACGATCAGTT
>probe:Drosophila_2:1641527_at:202:103; Interrogation_Position=1952; Antisense; AGAGCTTCCAGCTTCTTTGGTTTAC
>probe:Drosophila_2:1641527_at:177:279; Interrogation_Position=1996; Antisense; CTATGGCTGTTTAGTGCTCATCCCA
>probe:Drosophila_2:1641527_at:374:529; Interrogation_Position=2058; Antisense; GGGAGCATTATATGCCGGCCTGCAG
>probe:Drosophila_2:1641527_at:353:523; Interrogation_Position=2094; Antisense; GGGCTTCGGGCTGGGAATCTTCATC
>probe:Drosophila_2:1641527_at:617:589; Interrogation_Position=2143; Antisense; TGGATTTTCCGTAAGTTCTGCTGCT
>probe:Drosophila_2:1641527_at:117:17; Interrogation_Position=2173; Antisense; ATTTTCCGCATTTTGGGACGCCTCA
>probe:Drosophila_2:1641527_at:137:43; Interrogation_Position=2212; Antisense; ATCGTCCACCTTCTTGTGGCGAGAA
>probe:Drosophila_2:1641527_at:166:423; Interrogation_Position=2232; Antisense; GAGAATCGTCTTGGCCACAGTGCGG
>probe:Drosophila_2:1641527_at:505:355; Interrogation_Position=2273; Antisense; GCACGGGCATGATGTTTGCTTTCAT
>probe:Drosophila_2:1641527_at:633:341; Interrogation_Position=2290; Antisense; GCTTTCATCTTTTTTACGGTGACCG
>probe:Drosophila_2:1641527_at:308:433; Interrogation_Position=2385; Antisense; GAGGTAGCCCAATGTCCTAACTTAA

Paste this into a BLAST search page for me
ACACGTCGTCCTTTATGAACTTCGGGTAGCTATTTCTGTGGAGTCCTGGCTGGCCGCTTTGGTTTACGATCAGTTAGAGCTTCCAGCTTCTTTGGTTTACCTATGGCTGTTTAGTGCTCATCCCAGGGAGCATTATATGCCGGCCTGCAGGGGCTTCGGGCTGGGAATCTTCATCTGGATTTTCCGTAAGTTCTGCTGCTATTTTCCGCATTTTGGGACGCCTCAATCGTCCACCTTCTTGTGGCGAGAAGAGAATCGTCTTGGCCACAGTGCGGGCACGGGCATGATGTTTGCTTTCATGCTTTCATCTTTTTTACGGTGACCGGAGGTAGCCCAATGTCCTAACTTAA

Full Affymetrix probeset data:

Annotations for 1641527_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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