FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1641540_a_at:

>probe:Drosophila_2:1641540_a_at:667:519; Interrogation_Position=1035; Antisense; GTGGCGAGTTCTGGCTTGGCCTACA
>probe:Drosophila_2:1641540_a_at:403:385; Interrogation_Position=1094; Antisense; GAACTATATATCCAGCTCGTCGATT
>probe:Drosophila_2:1641540_a_at:644:501; Interrogation_Position=1112; Antisense; GTCGATTTCGACAATGCTAGTGCTT
>probe:Drosophila_2:1641540_a_at:116:147; Interrogation_Position=1178; Antisense; AAATACAAACTGCTTTCCCTTGGCG
>probe:Drosophila_2:1641540_a_at:505:27; Interrogation_Position=1204; Antisense; ATACTCAGGAAATGCTGGCGACGCA
>probe:Drosophila_2:1641540_a_at:127:583; Interrogation_Position=1219; Antisense; TGGCGACGCATTTCGCAGTCATATA
>probe:Drosophila_2:1641540_a_at:231:427; Interrogation_Position=1343; Antisense; GAGTTGGACACGACCGATGGCATTT
>probe:Drosophila_2:1641540_a_at:650:95; Interrogation_Position=1394; Antisense; AGATATCCCCTGAAGTCGTGCAAAA
>probe:Drosophila_2:1641540_a_at:323:165; Interrogation_Position=1416; Antisense; AAATGCTAATCAGACCAATGCCGTG
>probe:Drosophila_2:1641540_a_at:221:415; Interrogation_Position=1428; Antisense; GACCAATGCCGTGAGCCAAGTATAA
>probe:Drosophila_2:1641540_a_at:697:377; Interrogation_Position=905; Antisense; GAACCCTTTGCCTCAGTTTTCGAGG
>probe:Drosophila_2:1641540_a_at:674:693; Interrogation_Position=922; Antisense; TTTCGAGGATATTCCTTCTGCCGGT
>probe:Drosophila_2:1641540_a_at:561:713; Interrogation_Position=937; Antisense; TTCTGCCGGTCGTGGTTGGATGATA
>probe:Drosophila_2:1641540_a_at:127:569; Interrogation_Position=980; Antisense; GGCAGTTTCGATAACGCCACTGAAT

Paste this into a BLAST search page for me
GTGGCGAGTTCTGGCTTGGCCTACAGAACTATATATCCAGCTCGTCGATTGTCGATTTCGACAATGCTAGTGCTTAAATACAAACTGCTTTCCCTTGGCGATACTCAGGAAATGCTGGCGACGCATGGCGACGCATTTCGCAGTCATATAGAGTTGGACACGACCGATGGCATTTAGATATCCCCTGAAGTCGTGCAAAAAAATGCTAATCAGACCAATGCCGTGGACCAATGCCGTGAGCCAAGTATAAGAACCCTTTGCCTCAGTTTTCGAGGTTTCGAGGATATTCCTTCTGCCGGTTTCTGCCGGTCGTGGTTGGATGATAGGCAGTTTCGATAACGCCACTGAAT

Full Affymetrix probeset data:

Annotations for 1641540_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720