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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1641606_s_at:

>probe:Drosophila_2:1641606_s_at:143:89; Interrogation_Position=1594; Antisense; AGTCTGGGACTGTTTGCGGCTGACC
>probe:Drosophila_2:1641606_s_at:554:89; Interrogation_Position=1674; Antisense; AGTCAAGCATGACGACGGCCCTGTA
>probe:Drosophila_2:1641606_s_at:520:575; Interrogation_Position=1690; Antisense; GGCCCTGTACTTCAGCATTTACGAT
>probe:Drosophila_2:1641606_s_at:400:115; Interrogation_Position=1722; Antisense; AGCAGGTGCGCTTCTAGGTCGGACT
>probe:Drosophila_2:1641606_s_at:668:499; Interrogation_Position=1766; Antisense; GTCTGAAAGCAATTGTGCGCCCAAA
>probe:Drosophila_2:1641606_s_at:23:321; Interrogation_Position=1782; Antisense; GCGCCCAAACGGAATCTACACTGTA
>probe:Drosophila_2:1641606_s_at:575:699; Interrogation_Position=1816; Antisense; TTTATATATATTTACCGCAGCGCGT
>probe:Drosophila_2:1641606_s_at:70:105; Interrogation_Position=1852; Antisense; AGACTTAGGCTAACTCTGTTGATTA
>probe:Drosophila_2:1641606_s_at:24:477; Interrogation_Position=1877; Antisense; GTTTTCGGTTGTGCGTATCTTTTCT
>probe:Drosophila_2:1641606_s_at:558:727; Interrogation_Position=1932; Antisense; TTGGTCAGCGCTTTAGTACACACAC
>probe:Drosophila_2:1641606_s_at:80:159; Interrogation_Position=1951; Antisense; ACACACGAATAGTTGGCGCACCAGT
>probe:Drosophila_2:1641606_s_at:76:487; Interrogation_Position=2003; Antisense; GTAGTTCATTATTCGGCAGAGCACC
>probe:Drosophila_2:1641606_s_at:717:101; Interrogation_Position=2020; Antisense; AGAGCACCTCTATTCACAGACACAT
>probe:Drosophila_2:1641606_s_at:331:283; Interrogation_Position=2088; Antisense; CTGCGCTGGCAGTTCATTTGATATT

Paste this into a BLAST search page for me
AGTCTGGGACTGTTTGCGGCTGACCAGTCAAGCATGACGACGGCCCTGTAGGCCCTGTACTTCAGCATTTACGATAGCAGGTGCGCTTCTAGGTCGGACTGTCTGAAAGCAATTGTGCGCCCAAAGCGCCCAAACGGAATCTACACTGTATTTATATATATTTACCGCAGCGCGTAGACTTAGGCTAACTCTGTTGATTAGTTTTCGGTTGTGCGTATCTTTTCTTTGGTCAGCGCTTTAGTACACACACACACACGAATAGTTGGCGCACCAGTGTAGTTCATTATTCGGCAGAGCACCAGAGCACCTCTATTCACAGACACATCTGCGCTGGCAGTTCATTTGATATT

Full Affymetrix probeset data:

Annotations for 1641606_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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