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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1641620_s_at:

>probe:Drosophila_2:1641620_s_at:312:381; Interrogation_Position=4919; Antisense; GAACTCGAACTTTTGGCTCGAACGA
>probe:Drosophila_2:1641620_s_at:309:137; Interrogation_Position=4940; Antisense; ACGACTGAACCATAGCGCGTGGCAA
>probe:Drosophila_2:1641620_s_at:392:241; Interrogation_Position=5021; Antisense; AATTCTCGGGTACCGGGCAATATTG
>probe:Drosophila_2:1641620_s_at:163:567; Interrogation_Position=5106; Antisense; GGCAAACTGAAGCAATTCCAGCAAT
>probe:Drosophila_2:1641620_s_at:38:177; Interrogation_Position=5167; Antisense; AAACGCCATGGAACGACTGACAGAC
>probe:Drosophila_2:1641620_s_at:580:393; Interrogation_Position=5189; Antisense; GACAAGTATTCGCTAAACATTCTGA
>probe:Drosophila_2:1641620_s_at:408:179; Interrogation_Position=5203; Antisense; AAACATTCTGATCCAAATCTGCCCG
>probe:Drosophila_2:1641620_s_at:622:287; Interrogation_Position=5226; Antisense; CGGCCCGTCAAAAAGTGTTCCACAG
>probe:Drosophila_2:1641620_s_at:459:77; Interrogation_Position=5239; Antisense; AGTGTTCCACAGCACGAGTAGAATT
>probe:Drosophila_2:1641620_s_at:398:209; Interrogation_Position=5317; Antisense; AAGCATATAATCCTACGGCCCAGTA
>probe:Drosophila_2:1641620_s_at:107:319; Interrogation_Position=5334; Antisense; GCCCAGTAAACCCAATCCAAATTCA
>probe:Drosophila_2:1641620_s_at:330:629; Interrogation_Position=5349; Antisense; TCCAAATTCAATACTAAGCCCGCAG
>probe:Drosophila_2:1641620_s_at:64:659; Interrogation_Position=5363; Antisense; TAAGCCCGCAGATATTATGTCATTC
>probe:Drosophila_2:1641620_s_at:609:459; Interrogation_Position=5408; Antisense; GATTACGATTTTCGAACGTCTCTTA

Paste this into a BLAST search page for me
GAACTCGAACTTTTGGCTCGAACGAACGACTGAACCATAGCGCGTGGCAAAATTCTCGGGTACCGGGCAATATTGGGCAAACTGAAGCAATTCCAGCAATAAACGCCATGGAACGACTGACAGACGACAAGTATTCGCTAAACATTCTGAAAACATTCTGATCCAAATCTGCCCGCGGCCCGTCAAAAAGTGTTCCACAGAGTGTTCCACAGCACGAGTAGAATTAAGCATATAATCCTACGGCCCAGTAGCCCAGTAAACCCAATCCAAATTCATCCAAATTCAATACTAAGCCCGCAGTAAGCCCGCAGATATTATGTCATTCGATTACGATTTTCGAACGTCTCTTA

Full Affymetrix probeset data:

Annotations for 1641620_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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