FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1641723_a_at:

>probe:Drosophila_2:1641723_a_at:306:625; Interrogation_Position=1435; Antisense; TGCCCGTGGGATTGGTCATAGCCTT
>probe:Drosophila_2:1641723_a_at:532:315; Interrogation_Position=1455; Antisense; GCCTTGCCCACCAATTCAGAAAATT
>probe:Drosophila_2:1641723_a_at:659:153; Interrogation_Position=1487; Antisense; ACAGGCGATCTGTGTGCTCCGAGTT
>probe:Drosophila_2:1641723_a_at:188:623; Interrogation_Position=1559; Antisense; TGCGTACAACTTTCTGATTGGCGGA
>probe:Drosophila_2:1641723_a_at:422:145; Interrogation_Position=1651; Antisense; ACTCGCAGAGTCTTAGCTTCGCCTA
>probe:Drosophila_2:1641723_a_at:722:115; Interrogation_Position=1665; Antisense; AGCTTCGCCTATATCGGATCGTTTA
>probe:Drosophila_2:1641723_a_at:508:545; Interrogation_Position=1680; Antisense; GGATCGTTTAAGACCATCCAGCCGT
>probe:Drosophila_2:1641723_a_at:200:125; Interrogation_Position=1699; Antisense; AGCCGTCGGCCAAGCAACTAAGTGT
>probe:Drosophila_2:1641723_a_at:535:657; Interrogation_Position=1717; Antisense; TAAGTGTTACTCGTCTTTTGCTGGA
>probe:Drosophila_2:1641723_a_at:4:361; Interrogation_Position=1759; Antisense; GCAAGATTGCACCAAGCTACCGATT
>probe:Drosophila_2:1641723_a_at:699:339; Interrogation_Position=1774; Antisense; GCTACCGATTTACGGCGAGCAGTAA
>probe:Drosophila_2:1641723_a_at:174:209; Interrogation_Position=1844; Antisense; AAGCTTCGCCAACTGGACTCATTGG
>probe:Drosophila_2:1641723_a_at:527:461; Interrogation_Position=1928; Antisense; GATTTTGTATCATAGGTGTTCTCCC
>probe:Drosophila_2:1641723_a_at:706:513; Interrogation_Position=1943; Antisense; GTGTTCTCCCATTAATGTGTGGCAT

Paste this into a BLAST search page for me
TGCCCGTGGGATTGGTCATAGCCTTGCCTTGCCCACCAATTCAGAAAATTACAGGCGATCTGTGTGCTCCGAGTTTGCGTACAACTTTCTGATTGGCGGAACTCGCAGAGTCTTAGCTTCGCCTAAGCTTCGCCTATATCGGATCGTTTAGGATCGTTTAAGACCATCCAGCCGTAGCCGTCGGCCAAGCAACTAAGTGTTAAGTGTTACTCGTCTTTTGCTGGAGCAAGATTGCACCAAGCTACCGATTGCTACCGATTTACGGCGAGCAGTAAAAGCTTCGCCAACTGGACTCATTGGGATTTTGTATCATAGGTGTTCTCCCGTGTTCTCCCATTAATGTGTGGCAT

Full Affymetrix probeset data:

Annotations for 1641723_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720