FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1641737_a_at:

>probe:Drosophila_2:1641737_a_at:360:451; Interrogation_Position=2231; Antisense; GATCTTCGCGGGATTCGCGACCGTT
>probe:Drosophila_2:1641737_a_at:567:331; Interrogation_Position=2276; Antisense; GCGGCCAGCGAAGCTATCGGGACAA
>probe:Drosophila_2:1641737_a_at:100:279; Interrogation_Position=2289; Antisense; CTATCGGGACAACAGGCGCTAGGCC
>probe:Drosophila_2:1641737_a_at:562:323; Interrogation_Position=2304; Antisense; GCGCTAGGCCGCATCGAGGTTTAAA
>probe:Drosophila_2:1641737_a_at:716:631; Interrogation_Position=2341; Antisense; TCCTGGCCTCGCTAGAATCGGAAAG
>probe:Drosophila_2:1641737_a_at:39:393; Interrogation_Position=2361; Antisense; GAAAGTGTAATCCTAATCCTCTCGC
>probe:Drosophila_2:1641737_a_at:316:235; Interrogation_Position=2375; Antisense; AATCCTCTCGCGTGTGAAAATCTAA
>probe:Drosophila_2:1641737_a_at:648:387; Interrogation_Position=2403; Antisense; GAAATATTGAATGCGTTACGGTATA
>probe:Drosophila_2:1641737_a_at:82:255; Interrogation_Position=2446; Antisense; TAAAACCGGCTATCGTCTAAAGTCG
>probe:Drosophila_2:1641737_a_at:518:663; Interrogation_Position=2463; Antisense; TAAAGTCGATACAACTCTCTTTCCC
>probe:Drosophila_2:1641737_a_at:697:593; Interrogation_Position=2637; Antisense; TGTGAACTTTATTTACCTCCCAAAG
>probe:Drosophila_2:1641737_a_at:293:277; Interrogation_Position=2649; Antisense; TTACCTCCCAAAGCGAAAAGTAGCG
>probe:Drosophila_2:1641737_a_at:127:425; Interrogation_Position=2691; Antisense; GAGACTTTAAAGAGACGCCCAACAA
>probe:Drosophila_2:1641737_a_at:51:517; Interrogation_Position=2785; Antisense; GTGTGTATCGTGTGTGCCAAACCCC

Paste this into a BLAST search page for me
GATCTTCGCGGGATTCGCGACCGTTGCGGCCAGCGAAGCTATCGGGACAACTATCGGGACAACAGGCGCTAGGCCGCGCTAGGCCGCATCGAGGTTTAAATCCTGGCCTCGCTAGAATCGGAAAGGAAAGTGTAATCCTAATCCTCTCGCAATCCTCTCGCGTGTGAAAATCTAAGAAATATTGAATGCGTTACGGTATATAAAACCGGCTATCGTCTAAAGTCGTAAAGTCGATACAACTCTCTTTCCCTGTGAACTTTATTTACCTCCCAAAGTTACCTCCCAAAGCGAAAAGTAGCGGAGACTTTAAAGAGACGCCCAACAAGTGTGTATCGTGTGTGCCAAACCCC

Full Affymetrix probeset data:

Annotations for 1641737_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720