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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1641740_at:

>probe:Drosophila_2:1641740_at:37:569; Interrogation_Position=1019; Antisense; TGGTTTGCCCCGAAAATATATCCTT
>probe:Drosophila_2:1641740_at:301:675; Interrogation_Position=1043; Antisense; TAGCCAGGGATTTGCCTATCCTGAC
>probe:Drosophila_2:1641740_at:263:683; Interrogation_Position=1059; Antisense; TATCCTGACCACAGCGGAGTTGGGA
>probe:Drosophila_2:1641740_at:107:267; Interrogation_Position=1145; Antisense; CAGGCCGAAACATTTTCCGACTGGT
>probe:Drosophila_2:1641740_at:21:369; Interrogation_Position=1163; Antisense; GACTGGTTTGGACGGAACTCTTTCA
>probe:Drosophila_2:1641740_at:58:583; Interrogation_Position=1236; Antisense; TGGCGGTTGTGATTTCCGATGTCCT
>probe:Drosophila_2:1641740_at:211:563; Interrogation_Position=1269; Antisense; GGAAGTCTGCATTCCAAAGCACTTA
>probe:Drosophila_2:1641740_at:215:229; Interrogation_Position=1321; Antisense; AATGTGACGCACACTTCGACGTTGT
>probe:Drosophila_2:1641740_at:320:593; Interrogation_Position=1385; Antisense; TGGGATTACTCCATCATGCTGGCGA
>probe:Drosophila_2:1641740_at:10:453; Interrogation_Position=1446; Antisense; GATCTGCCTGAAACGCGATCTCAGT
>probe:Drosophila_2:1641740_at:335:453; Interrogation_Position=1462; Antisense; GATCTCAGTGAGTTGCCATATGGAA
>probe:Drosophila_2:1641740_at:388:703; Interrogation_Position=1489; Antisense; TTATCCTTGATAGCCCTTGGACTGT
>probe:Drosophila_2:1641740_at:29:695; Interrogation_Position=1522; Antisense; TTTGCACTGCTCTTCGCGATTCTAA
>probe:Drosophila_2:1641740_at:439:547; Interrogation_Position=1550; Antisense; GGATGTGCAGAAGCTCGTCCTTACA

Paste this into a BLAST search page for me
TGGTTTGCCCCGAAAATATATCCTTTAGCCAGGGATTTGCCTATCCTGACTATCCTGACCACAGCGGAGTTGGGACAGGCCGAAACATTTTCCGACTGGTGACTGGTTTGGACGGAACTCTTTCATGGCGGTTGTGATTTCCGATGTCCTGGAAGTCTGCATTCCAAAGCACTTAAATGTGACGCACACTTCGACGTTGTTGGGATTACTCCATCATGCTGGCGAGATCTGCCTGAAACGCGATCTCAGTGATCTCAGTGAGTTGCCATATGGAATTATCCTTGATAGCCCTTGGACTGTTTTGCACTGCTCTTCGCGATTCTAAGGATGTGCAGAAGCTCGTCCTTACA

Full Affymetrix probeset data:

Annotations for 1641740_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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