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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1641747_s_at:

>probe:Drosophila_2:1641747_s_at:717:571; Interrogation_Position=2672; Antisense; GGCTGAGATTAAGCATTTAGATTCT
>probe:Drosophila_2:1641747_s_at:703:461; Interrogation_Position=2691; Antisense; GATTCTAGAGACAATGACTCAGCGC
>probe:Drosophila_2:1641747_s_at:341:397; Interrogation_Position=2700; Antisense; GACAATGACTCAGCGCAAGTTTGTT
>probe:Drosophila_2:1641747_s_at:275:265; Interrogation_Position=2729; Antisense; CATGTTGCCGCCAAACCGGTCACAA
>probe:Drosophila_2:1641747_s_at:395:537; Interrogation_Position=2746; Antisense; GGTCACAACCACACTTTGCTTCGAT
>probe:Drosophila_2:1641747_s_at:675:127; Interrogation_Position=2753; Antisense; ACCACACTTTGCTTCGATTTTTACA
>probe:Drosophila_2:1641747_s_at:544:257; Interrogation_Position=2757; Antisense; CACTTTGCTTCGATTTTTACATTTT
>probe:Drosophila_2:1641747_s_at:277:277; Interrogation_Position=2807; Antisense; CTATCGATATCCCATATAAATGATG
>probe:Drosophila_2:1641747_s_at:145:165; Interrogation_Position=2824; Antisense; AAATGATGATGTTTCGCGTTCGCAT
>probe:Drosophila_2:1641747_s_at:316:27; Interrogation_Position=2897; Antisense; ATAGCATTCTCTTTTGTCTTTGTTT
>probe:Drosophila_2:1641747_s_at:542:715; Interrogation_Position=2903; Antisense; TTCTCTTTTGTCTTTGTTTCTGTAA
>probe:Drosophila_2:1641747_s_at:246:497; Interrogation_Position=2912; Antisense; GTCTTTGTTTCTGTAACACTTAGAA
>probe:Drosophila_2:1641747_s_at:569:227; Interrogation_Position=2999; Antisense; AATGTTGACCTATTATAAGTTTTAT
>probe:Drosophila_2:1641747_s_at:602:155; Interrogation_Position=3032; Antisense; ACAGCCTATGTGAGAGATGTAGTTT

Paste this into a BLAST search page for me
GGCTGAGATTAAGCATTTAGATTCTGATTCTAGAGACAATGACTCAGCGCGACAATGACTCAGCGCAAGTTTGTTCATGTTGCCGCCAAACCGGTCACAAGGTCACAACCACACTTTGCTTCGATACCACACTTTGCTTCGATTTTTACACACTTTGCTTCGATTTTTACATTTTCTATCGATATCCCATATAAATGATGAAATGATGATGTTTCGCGTTCGCATATAGCATTCTCTTTTGTCTTTGTTTTTCTCTTTTGTCTTTGTTTCTGTAAGTCTTTGTTTCTGTAACACTTAGAAAATGTTGACCTATTATAAGTTTTATACAGCCTATGTGAGAGATGTAGTTT

Full Affymetrix probeset data:

Annotations for 1641747_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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